Genomics Data Carpentry - Online

Genomics Aotearoa

A data carpentry workshop to teach the fundamentals of genomics data, data management and analysis for genomics research.

<a href="https://datacarpentry.org/organization-genomics/" target="_blank" data-msys-clicktrack="0" rel="nofollow noopener noreferrer"></a>This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught over two consecutive days from 10:00am-4:00pm NZT on the 8th and 9th of March 2023 and is for New Zealand researchers interested in beginning genomic data analysis.The focus of this workshop is on working with genomics data, data management and analysis for genomics research, including best practices for organization of bioinformatics projects and data, use of command line utilities, use of command line tools to analyze sequence quality and perform variant calling, and connecting to and using cloud computing.This lesson assumes learner has no prior experience with the tools covered in the workshop. However, learners are expected to have some familiarity with biological concepts, including the concept of genomic variation within a population. This workshop will cover three topics:- <a href="https://datacarpentry.org/organization-genomics/" target="_blank" data-msys-clicktrack="0" rel="nofollow noopener noreferrer">Project organisation</a> - <a href="https://datacarpentry.org/shell-genomics/" target="_blank" data-msys-clicktrack="0" rel="nofollow noopener noreferrer">Introduction to the command line</a>- <a href="https://datacarpentry.org/wrangling-genomics/" target="_blank" data-msys-clicktrack="0" rel="nofollow noopener noreferrer">Data wrangling</a>SetupThis is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms - there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.Participants must have their own laptops and plan to participate actively. You will require a working web browser.If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

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Genomics Data Carpentry - Online

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